Kazakhstan reports first influenza D detection in livestock

Bottom line

Kazakhstan has reported its first molecular detection of influenza D virus, or IDV, in livestock, according to a new paper in Frontiers in Veterinary Science. Investigators screened 867 samples collected from 2023 through 2026 from cattle, camels, Maral deer, and pigs, and found 11 PCR-positive animals, for an RNA positivity rate of 1.27%. Positive animals were found in multiple regions, and full HEF gene sequences from two cattle samples in the Zhetysu Region placed the viruses in the D/Yama2019 lineage, with more than 98.8% nucleotide identity to contemporary Asian strains. The authors say this expands the known geographic range of IDV into Central Asia. (frontiersin.org)

Why it matters: For veterinarians and animal health teams, the finding adds another reminder that IDV is circulating more widely than routine diagnostics may show. Cattle are considered the main reservoir, and IDV is increasingly recognized as part of the bovine respiratory disease complex, even though active detection rates can be low in field surveillance. The Kazakhstan paper also detected IDV in Maral deer, which may point to a broader wildlife-livestock interface, and the authors call for expanded surveillance near borders, livestock markets, quarantine sites, and transport corridors. CDC says influenza D viruses primarily affect cattle and aren’t known to cause illness in people, but recent reviews note ongoing interest in possible zoonotic risk and occupational exposure. (frontiersin.org)

What to watch: Watch for follow-up surveillance in neighboring countries, additional sequencing from Central Asia, and whether IDV testing becomes more routine in respiratory workups for cattle herds in the region. (frontiersin.org)

Key facts

Finding
Kazakhstan reported its first molecular detection of influenza D virus in livestock.
Study design
Active surveillance of livestock samples collected from 2023 through 2026.
Sample size
867 samples from cattle, camels, Maral deer, and pigs.
Positive results
11 PCR-positive animals.
RNA positivity rate
1.27%.
Sequencing result
Two cattle samples from the Zhetysu Region clustered in the D/Yama2019 lineage.
Genetic similarity
More than 98.8% nucleotide identity to contemporary Asian strains.
Main implication
The finding expands the known geographic range of IDV into Central Asia.

Influenza D virus has now been molecularly confirmed in Kazakhstan for the first time, extending the map of this livestock-associated virus into Central Asia. In a study published in Frontiers in Veterinary Science, researchers reported 11 positive detections among 867 livestock samples collected between 2023 and 2026, with sequencing from two cattle samples showing circulation of the D/Yama2019 lineage. The authors describe the finding as an important geographic expansion of an emerging veterinary pathogen already documented elsewhere in Asia. (frontiersin.org)

That matters because IDV has steadily shifted from a niche virology topic to a pathogen veterinarians increasingly associate with cattle respiratory health. Although the virus was first isolated from pigs, cattle are now widely regarded as the principal reservoir. Reviews and CDC materials describe influenza D as primarily affecting cattle, and a growing body of literature links it to bovine respiratory disease complex, one of the costliest health problems in cattle production. (pmc.ncbi.nlm.nih.gov)

The Kazakhstan study adds several useful details. Researchers conducted active surveillance across cattle, camels, Maral deer, and pigs, then identified positives in geographically distinct regions, suggesting the virus isn’t limited to a single localized cluster. The overall RNA positivity rate was 1.27%, which the authors say is in line with some recent Asian reports. They also note that low PCR positivity doesn’t necessarily mean limited circulation, since prior serology studies in other countries have found much higher evidence of past exposure in cattle than molecular surveillance alone would suggest. (frontiersin.org)

The sequencing result is the bigger epidemiologic signal. The two Kazakhstan cattle strains clustered within the D/Yama2019 lineage and were closely related to contemporary Asian viruses. That fits with prior reports showing the D/Yama2019 lineage emerging first in Japan and then being identified in China, South Korea, and Australia. In that context, Kazakhstan appears to represent a further westward step in the lineage’s spread across Eurasia, likely relevant to cross-border animal movement and regional trade routes. That last point is partly an inference, but it’s consistent with the paper’s call for surveillance at borders, livestock markets, quarantine facilities, and transport corridors. (frontiersin.org)

The paper also reports detection in Maral deer, which is notable for mixed-species surveillance. IDV is already known to infect multiple animal species, but every added host and geography sharpens the One Health picture around how the virus moves in real-world production and wildlife settings. Expert commentary in a 2026 Emerging Infectious Diseases review goes further, arguing that IDV deserves closer attention not only because of its host range and evolution, but also because evidence is accumulating for subclinical human exposure among people who work closely with cattle. At the same time, CDC’s current public-facing guidance still says influenza D viruses aren’t known to cause illness in people. (frontiersin.org)

Why it matters: For veterinary professionals, this is less about an immediate practice-changing alert and more about surveillance, differential diagnosis, and biosecurity awareness. IDV can be easy to miss because herd-level circulation may be broader than PCR snapshots suggest, and because respiratory disease cases are often polymicrobial. In regions with expanding cattle movement, shared grazing systems, or wildlife contact, the Kazakhstan findings support the case for including IDV in research panels and targeted respiratory investigations, especially when trying to better characterize BRD pressure or unexplained respiratory patterns. (frontiersin.org)

The study may also have diagnostic value beyond the headline. The authors say the primer panel developed in the work could help support fuller genomic recovery and continued regional surveillance. That could matter if Central Asia becomes a more active zone for lineage tracking, reassortment monitoring, or comparative work on how D/Yama2019 differs from older North American lineages such as D/OK and D/660. (frontiersin.org)

What to watch: The next signals to watch are whether neighboring countries report similar detections, whether serosurveys show broader exposure than PCR testing suggests, and whether public and private veterinary labs in the region begin integrating IDV more consistently into cattle respiratory surveillance programs. (frontiersin.org)

How this developed

  1. Researchers began collecting livestock samples for the Kazakhstan surveillance study.

  2. Researchers completed sample collection and reported 11 PCR-positive animals.

Common questions

  • What animals were tested?
    Cattle, camels, Maral deer, and pigs.
  • Which samples were sequenced?
    Full HEF gene sequences were obtained from two cattle samples in the Zhetysu Region.
  • What lineage was found?
    The viruses were placed in the D/Yama2019 lineage.
  • What does this mean for the virus's range?
    The authors say it expands the known geographic range of influenza D virus into Central Asia.

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